PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052761.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family YABBY
Protein Properties Length: 215aa    MW: 23710.1 Da    PI: 9.3563
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052761.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY141.87.7e-44251665163
         YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                     se++Cyv+CnfCnt+lav +P + ++ +vtv+CGhC++l  ++     + ++ +     +  ++ l  ++  +++++  ++++    +s s+   
  EcC052761.20  25 PPSEHLCYVRCNFCNTVLAVGIPCKRMLDTVTVKCGHCSNLSFLS-----TRTPLQG----QCLDHPLSLQG-FSSDFRRGQSSS----SSSST--- 104
                   579************************************975422.....2222222....23333222222.222333333322....22222... PP

         YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                   s  ++  +p++ p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  EcC052761.20 105 S-GDQPLSPKAAPfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 166
                   2.2334455555559**********************************************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.3E-5526169IPR006780YABBY protein
SuperFamilySSF470951.31E-8110164IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.7E-5120165IPR009071High mobility group box domain
CDDcd013906.84E-6127163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
TYTFSSGWVE GVVNHMEDKA SMEVPPSEHL CYVRCNFCNT VLAVGIPCKR MLDTVTVKCG  60
HCSNLSFLST RTPLQGQCLD HPLSLQGFSS DFRRGQSSSS SSSTSGDQPL SPKAAPFVVK  120
PPEKKHRLPS AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARYIPHS PSGSAPGSSS  180
HVSNHPFLFL LGPIKRTCIL KKKIIKEFHL LDDGA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046616.11e-120PREDICTED: protein CRABS CLAW
SwissprotQ76EJ02e-64YABDL_ORYSJ; Protein DROOPING LEAF
SwissprotQ8L9252e-64CRC_ARATH; Protein CRABS CLAW
TrEMBLA0A059D7D21e-120A0A059D7D2_EUCGR; Uncharacterized protein
STRINGVIT_01s0011g00140.t012e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97252835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-58YABBY family protein